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Helen Willsey, PhD

Working Title

Assistant Professor

Preferred Pronouns
She/Her/Hers
The Willsey Lab at UCSF focuses on uncovering the molecular mechanisms that drive autism spectrum disorder and its frequently co-occurring conditions. Our lab investigates how diverse autism-associated genes, many of which display striking pleiotropy, converge on shared biological pathways during development. We use Xenopus and human cell culture models to identify points of convergence among seemingly unrelated genetic risk factors, revealing common molecular mechanisms that contribute not only to autism but also to its comorbidities, including congenital heart disease and gastrointestinal dysfunction. Our approach integrates high-throughput functional genomics, live imaging, and in vivo perturbation to map the developmental trajectories altered by neurodevelopmental risk genes. By resolving the complexity introduced by genetic pleiotropy, we aim to define actionable entry points for therapeutic discovery. We're passionate about advancing both fundamental neuroscience and translational insight, while also mentoring the next generation of scientists. If you’re interested in collaboration, mentorship, or learning more about our work, feel free to connect.

  • Postdoc, 2021 - Developmental Neuroscience, University of California, San Francisco
  • Postdoc, 2016 - Xenopus Methods, University of California, Berkeley
  • PhD, 2015 - Genetics, Yale University
  • BS, 2009 - Biology, Duke University

Katanin
Cilia
Organogenesis
Autistic Disorder
Xenopus Proteins
Embryo, Nonmammalian
Enteric Nervous System
Gastrointestinal Diseases
Neurosciences
Xenopus Laevis
Autism Spectrum Disorder
Xenopus
Gastrointestinal Motility
Protein-Tyrosine Kinases
Neurogenesis

  • NIH Director’s New Innovator Award, NIH, 2025
  • Chan Zuckerberg Biohub Investigator Award, Chan Zuckerberg Biohub, 2021
  • Early Stage Investigator Award, International Society for Autism Research, 2021
  • John Gurdon Outstanding Speaker Award, International Xenopus Meeting, 2021
  • Dean’s Award for Excellence in Mentoring, UCSF, 2020
  • Psychiatry Department Trainee Research Award, UCSF, 2020
  • 1st Place, Postdoc Poster, International Xenopus Meeting, 2016
  • 1st Place, Postdoc Poster, GGD Retreat, UC Berkeley, 2016
  • 1st Place, Image Competition, CSHL, Xenopus Course, 2015
  • Carolyn Slayman Outstanding Genetics Thesis Prize, Yale University, 2015
  • Best Research in Progress Seminar, Genetics Department, Yale University, 2013
  • Best Poster Award, Genetics Department Retreat, Yale University, 2011
  • Edward C. Horn Memorial Prize for Excellence in Biology, Duke University, 2009
  • Phi Beta Kappa Honor Society, Duke University, 2009
  • Summa cum laude, Duke University, 2009

September 18, 2025 - August 31, 2028 - Pleiotropy of autism-associated chromatin regulators , Principal Investigator . Sponsor: NIH, Sponsor Award ID: DP2OD040906
April 1, 2025 - March 31, 2027 - Autism genes in ciliary biology , Principal Investigator . Sponsor: Eagles Autism Foundation, Sponsor Award ID: Pilot Award
March 1, 2022 - February 28, 2027 - Psychiatric disorder-specific mechanisms of risk and resilience , Principal Investigator . Sponsor: Chan Zuckerberg Biohub - San Francisco, Sponsor Award ID: Investigator Award
January 1, 2026 - December 31, 2026 - Variant functional testing and biomarker development in SYNGAP1-related disorders , PI . Sponsor: Cure SYNGAP1 Foundation, Sponsor Award ID: Investigator Award
October 1, 2025 - September 30, 2026 - STXBP1 in respiratory cilia form and function , Principal Investigator . Sponsor: STXBP1 Foundation, Sponsor Award ID: Pilot Award

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